So now that 98b is being planned, I noticed something in the Beta. Rivecoder revamped the Server Console yet again. This time, one feature, that seems to conflict with IDE, is the File>Join Server from the drop down menu. Reason why, well, when you join the server, Skulltag reads from the ideservers.cfg Witch means, its all stock settings. Your name, settings, video size, etc all stock.
Now, as of yet, I'm not sure if its from Skulltag's end. It could be from IDE, since I have done the same thing with DoomSeeker. When ran with DoomSeeker, (File>Join Server), it read from the Skulltag.ini, not IDeserver.cfg. So, Just giving you a heads up.
As of yet, This is only coming from the Beta, so it might be fixed, not sure yet